5VS6 image
Deposition Date 2017-05-11
Release Date 2017-12-20
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5VS6
Title:
Structure of DUB complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.27 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ubiquitin carboxyl-terminal hydrolase 7
Gene (Uniprot):USP7
Chain IDs:A, B
Chain Length:353
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-Guided Development of a Potent and Selective Non-covalent Active-Site Inhibitor of USP7.
Cell Chem Biol 24 1490 1500.e11 (2017)
PMID: 29056421 DOI: 10.1016/j.chembiol.2017.09.003

Abstact

Deubiquitinating enzymes (DUBs) have garnered significant attention as drug targets in the last 5-10 years. The excitement stems in large part from the powerful ability of DUB inhibitors to promote degradation of oncogenic proteins, especially proteins that are challenging to directly target but which are stabilized by DUB family members. Highly optimized and well-characterized DUB inhibitors have thus become highly sought after tools. Most reported DUB inhibitors, however, are polypharmacological agents possessing weak (micromolar) potency toward their primary target, limiting their utility in target validation and mechanism studies. Due to a lack of high-resolution DUB⋅small-molecule ligand complex structures, no structure-guided optimization efforts have been reported for a mammalian DUB. Here, we report a small-molecule⋅ubiquitin-specific protease (USP) family DUB co-structure and rapid design of potent and selective inhibitors of USP7 guided by the structure. Interestingly, the compounds are non-covalent active-site inhibitors.

Legend

Protein

Chemical

Disease

Primary Citation of related structures