5VRQ image
Deposition Date 2017-05-11
Release Date 2017-11-29
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5VRQ
Keywords:
Title:
Crystal structure of Legionella pneumophila effector AnkC
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.21 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ankyrin repeat-containing protein
Gene (Uniprot):legA12
Chain IDs:A
Chain Length:407
Number of Molecules:1
Biological Source:Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Primary Citation
Ankyrin repeats as a dimerization module.
Biochem. Biophys. Res. Commun. 495 1002 1007 (2018)
PMID: 29175332 DOI: 10.1016/j.bbrc.2017.11.135

Abstact

Legionella pneumophila is a pathogen, causing severe pneumonia in humans called Legionnaires' disease. AnkC (LegA12) is a poorly characterized 495-residue effector protein conserved in multiple Legionella species. Here, we report the crystal structure of a C-terminally truncated AnkC (2-384) at 3.2 Å resolution. The structure shows seven ankyrin repeats (ARs) with unique structural features. AnkC forms a dimer along the outer surface of loops between ARs. The dimer exists both in the crystal form and in solution, as shown by analytical ultracentrifugation. This is the first example of ARs as a dimerization module as opposed to solely a protein interaction domain. In addition, a novel α-helix insert between AR3-AR4 is positioned across the surface opposite the ankyrin groove. Sequence conservation suggests that the ankyrin groove of AnkC is a functional site that interacts with binding targets. This ankyrin domain structure is an important step towards a functional characterization of AnkC.

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