5VR1 image
Deposition Date 2017-05-09
Release Date 2017-11-15
Last Version Date 2023-06-14
Entry Detail
PDB ID:
5VR1
Title:
Structure of a Turripeptide from Unedogemmula bisaya venom
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Turripeptide
Chain IDs:A
Chain Length:18
Number of Molecules:1
Biological Source:Unedogemmula bisaya
Ligand Molecules
Primary Citation
Structure and Biological Activity of a Turripeptide from Unedogemmula bisaya Venom.
Biochemistry 56 6051 6060 (2017)
PMID: 29090914 DOI: 10.1021/acs.biochem.7b00485

Abstact

The turripeptide ubi3a was isolated from the venom of the marine gastropod Unedogemmula bisaya, family Turridae, by bioassay-guided purification; both native and synthetic ubi3a elicited prolonged tremors when injected intracranially into mice. The sequence of the peptide, DCCOCOAGAVRCRFACC-NH2 (O = 4-hydroxyproline) follows the framework III pattern for cysteines (CC-C-C-CC) in the M-superfamily of conopeptides. The three-dimensional structure determined by NMR spectroscopy indicated a disulfide connectivity that is not found in conopeptides with the cysteine framework III: C1-C4, C2-C6, C3-C5. The peptide inhibited the activity of the α9α10 nicotinic acetylcholine receptor with relatively low affinity (IC50, 10.2 μM). Initial Constellation Pharmacology data revealed an excitatory activity of ubi3a on a specific subset of mouse dorsal root ganglion neurons.

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Primary Citation of related structures