5VQM image
Entry Detail
PDB ID:
5VQM
Title:
Clostridium difficile TcdB-GTD bound to PA41 Fab
Biological Source:
PDB Version:
Deposition Date:
2017-05-09
Release Date:
2017-12-06
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Toxin B
Chain IDs:A, D (auth: B)
Chain Length:557
Number of Molecules:2
Biological Source:Peptoclostridium difficile
Polymer Type:polypeptide(L)
Description:PA41 FAB HEAVY CHAIN
Chain IDs:C (auth: H), F (auth: D)
Chain Length:222
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PA41 FAB LIGHT CHAIN
Chain IDs:B (auth: L), E (auth: C)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
A neutralizing antibody that blocks delivery of the enzymatic cargo of Clostridium difficile toxin TcdB into host cells.
J. Biol. Chem. 293 941 952 (2018)
PMID: 29180448 DOI: 10.1074/jbc.M117.813428

Abstact

Clostridium difficile infection is the leading cause of hospital-acquired diarrhea and is mediated by the actions of two toxins, TcdA and TcdB. The toxins perturb host cell function through a multistep process of receptor binding, endocytosis, low pH-induced pore formation, and the translocation and delivery of an N-terminal glucosyltransferase domain that inactivates host GTPases. Infection studies with isogenic strains having defined toxin deletions have established TcdB as an important target for therapeutic development. Monoclonal antibodies that neutralize TcdB function have been shown to protect against C. difficile infection in animal models and reduce recurrence in humans. Here, we report the mechanism of TcdB neutralization by PA41, a humanized monoclonal antibody capable of neutralizing TcdB from a diverse array of C. difficile strains. Through a combination of structural, biochemical, and cell functional studies, involving X-ray crystallography and EM, we show that PA41 recognizes a single, highly conserved epitope on the TcdB glucosyltransferase domain and blocks productive translocation and delivery of the enzymatic cargo into the host cell. Our study reveals a unique mechanism of C. difficile toxin neutralization by a monoclonal antibody, which involves targeting a process that is conserved across the large clostridial glucosylating toxins. The PA41 antibody described here provides a valuable tool for dissecting the mechanism of toxin pore formation and translocation across the endosomal membrane.

Legend

Protein

Chemical

Disease

Primary Citation of related structures