5VOB image
Deposition Date 2017-05-02
Release Date 2017-07-05
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5VOB
Title:
Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.02 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein H
Gene (Uniprot):gH
Chain IDs:A
Chain Length:725
Number of Molecules:1
Biological Source:Human cytomegalovirus
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein L
Gene (Uniprot):gL
Chain IDs:B
Chain Length:278
Number of Molecules:1
Biological Source:Human cytomegalovirus (strain 5508)
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein UL128
Gene (Uniprot):UL128
Chain IDs:C
Chain Length:171
Number of Molecules:1
Biological Source:Human cytomegalovirus (strain AD169)
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein UL130
Gene (Uniprot):UL130
Chain IDs:D
Chain Length:252
Number of Molecules:1
Biological Source:Human cytomegalovirus (strain Merlin)
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein UL131A
Gene (Uniprot):UL131A
Chain IDs:E
Chain Length:129
Number of Molecules:1
Biological Source:Human cytomegalovirus (strain Merlin)
Polymer Type:polypeptide(L)
Molecule:Fab 8I21 heavy chain
Chain IDs:F (auth: H)
Chain Length:289
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab 8I21 light chain
Chain IDs:G (auth: L)
Chain Length:235
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for potent antibody-mediated neutralization of human cytomegalovirus.
Sci Immunol 2 ? ? (2017)
PMID: 28783665 DOI: 10.1126/sciimmunol.aan1457

Abstact

Human cytomegalovirus (HCMV) is the leading viral cause of birth defects and organ transplant rejection. The HCMV gH/gL/UL128/UL130/UL131A complex (Pentamer) is the main target of humoral responses and thus a key vaccine candidate. We report two structures of Pentamer bound to human neutralizing antibodies, 8I21 and 9I6, at 3.0 and 5.9 Å resolution, respectively. The HCMV gH/gL architecture is similar to that of Epstein-Barr virus (EBV) except for amino-terminal extensions on both subunits. The extension of gL forms a subdomain composed of a three-helix bundle and a β hairpin that acts as a docking site for UL128/UL130/UL131A. Structural analysis reveals that Pentamer is a flexible molecule, and suggests sites for engineering stabilizing mutations. We also identify immunogenic surfaces important for cellular interactions by epitope mapping and functional assays. These results can guide the development of effective vaccines and immunotherapeutics against HCMV.

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Primary Citation of related structures