5VNP image
Deposition Date 2017-05-01
Release Date 2017-06-14
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5VNP
Keywords:
Title:
X-ray crystal structure of Halotag bound to the P1 benzoxadiazole fluorogenic ligand
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Haloalkane dehalogenase
Gene (Uniprot):dhaA
Chain IDs:A, B
Chain Length:290
Number of Molecules:2
Biological Source:Rhodococcus rhodochrous
Primary Citation
AgHalo: A Facile Fluorogenic Sensor to Detect Drug-Induced Proteome Stress.
Angew. Chem. Int. Ed. Engl. 56 8672 8676 (2017)
PMID: 28557281 DOI: 10.1002/anie.201702417

Abstact

Drug-induced proteome stress that involves protein aggregation may cause adverse effects and undermine the safety profile of a drug. Safety of drugs is regularly evaluated using cytotoxicity assays that measure cell death. However, these assays provide limited insights into the presence of proteome stress in live cells. A fluorogenic protein sensor is reported to detect drug-induced proteome stress prior to cell death. An aggregation prone Halo-tag mutant (AgHalo) was evolved to sense proteome stress through its aggregation. Detection of such conformational changes was enabled by a fluorogenic ligand that fluoresces upon AgHalo forming soluble aggregates. Using 5 common anticancer drugs, we exemplified detection of differential proteome stress before any cell death was observed. Thus, this sensor can be used to evaluate drug safety in a regime that the current cytotoxicity assays cannot cover and be generally applied to detect proteome stress induced by other toxins.

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