5VNB image
Deposition Date 2017-04-29
Release Date 2018-09-05
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5VNB
Keywords:
Title:
YEATS in complex with histone H3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:YEATS domain-containing protein 4
Gene (Uniprot):YEATS4
Chain IDs:A, B, C, D
Chain Length:148
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H3K23acK27ac peptide
Chain IDs:E (auth: K)
Chain Length:10
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode.
ACS Chem. Biol. 13 2739 2746 (2018)
PMID: 30071723 DOI: 10.1021/acschembio.8b00674

Abstact

GAS41 is a chromatin-associated protein that belongs to the YEATS family and is involved in the recognition of acetyl-lysine in histone proteins. A unique feature of GAS41 is the presence of a C-terminal coiled-coil domain, which is responsible for protein dimerization. Here, we characterized the specificity of the GAS41 YEATS domain and found that it preferentially binds to acetylated H3K18 and H3K27 peptides. Interestingly, we found that full-length, dimeric GAS41 binds to diacetylated H3 peptides with an enhanced affinity when compared to those for monoacetylated peptides, through a bivalent binding mode. We determined the crystal structure of the GAS41 YEATS domain with H3K23acK27ac to visualize the molecular basis of diacetylated histone binding. Our results suggest a unique binding mode in which full-length GAS41 is a reader of diacetylated histones.

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Primary Citation of related structures
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