5VN9 image
Entry Detail
PDB ID:
5VN9
Title:
Structure of bacteriorhodopsin from crystals grown at 4 deg C using GlyNCOC15+4 as an LCP host lipid
Biological Source:
PDB Version:
Deposition Date:
2017-04-28
Release Date:
2017-07-12
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bacteriorhodopsin
Chain IDs:A, B
Chain Length:262
Number of Molecules:2
Biological Source:Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LYR A LYS modified residue
Primary Citation
Chemically Stable Lipids for Membrane Protein Crystallization.
Cryst Growth Des 17 3502 3511 (2017)
PMID: 29290736 DOI: 10.1021/acs.cgd.7b00458

Abstact

Lipidic cubic phase (LCP) has been widely recognized as a promising membrane-mimicking matrix for biophysical studies of membrane proteins and their crystallization in a lipidic environment. Application of this material to a wide variety of membrane proteins, however, is hindered due to a limited number of available host lipids, mostly monoacylglycerols (MAGs). Here, we designed, synthesized and characterized a series of chemically stable lipids resistant to hydrolysis, with properties complementary to the widely used MAGs. In order to assess their potential to serve as host lipids for crystallization, we characterized the phase properties and lattice parameters of mesophases made of two most promising lipids at a variety of different conditions by polarized light microscopy and small-angle X-ray scattering. Both lipids showed remarkable chemical stability and an extended LCP region in the phase diagram covering a wide range of temperatures down to 4 °C. One of these lipids has been used for crystallization and structure determination of a prototypical membrane protein bacteriorhodopsin at 4 °C and 20 °C.

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