5VL3 image
Deposition Date 2017-04-24
Release Date 2017-10-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5VL3
Keywords:
Title:
CD22 d1-d3 in complex with therapeutic Fab Epratuzumab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Epratuzumab Fab Heavy Chain
Chain IDs:E (auth: A), F (auth: C), G (auth: E), H
Chain Length:222
Number of Molecules:4
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Epratuzumab Fab Light Chain
Chain IDs:I (auth: B), J (auth: D), K (auth: F), L
Chain Length:222
Number of Molecules:4
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:B-cell receptor CD22
Gene (Uniprot):CD22
Chain IDs:A (auth: Q), B (auth: R), C (auth: S), D (auth: T)
Chain Length:323
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular basis of human CD22 function and therapeutic targeting.
Nat Commun 8 764 764 (2017)
PMID: 28970495 DOI: 10.1038/s41467-017-00836-6

Abstact

CD22 maintains a baseline level of B-cell inhibition to keep humoral immunity in check. As a B-cell-restricted antigen, CD22 is targeted in therapies against dysregulated B cells that cause autoimmune diseases and blood cancers. Here we report the crystal structure of human CD22 at 2.1 Å resolution, which reveals that specificity for α2-6 sialic acid ligands is dictated by a pre-formed β-hairpin as a unique mode of recognition across sialic acid-binding immunoglobulin-type lectins. The CD22 ectodomain adopts an extended conformation that facilitates concomitant CD22 nanocluster formation on B cells and binding to trans ligands to avert autoimmunity in mammals. We structurally delineate the CD22 site targeted by the therapeutic antibody epratuzumab at 3.1 Å resolution and determine a critical role for CD22 N-linked glycosylation in antibody engagement. Our studies provide molecular insights into mechanisms governing B-cell inhibition and valuable clues for the design of immune modulators in B-cell dysfunction.The B-cell-specific co-receptor CD22 is a therapeutic target for depleting dysregulated B cells. Here the authors structurally characterize the ectodomain of CD22 and present its crystal structure with the bound therapeutic antibody epratuzumab, which gives insights into the mechanism of inhibition of B-cell activation.

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Primary Citation of related structures