ISDA

Deposition Date 2017-04-21

Release Date 2017-05-03

Last Version Date 2024-03-13

Entry Detail

PDB ID:

5VKC

Keywords:

signaling protein/inhibitor

Title:

Crystal structure of MCL-1 in complex with a BIM competitive inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.31 Å

R-Value Free:

0.22

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 32

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Induced myeloid leukemia cell differentiation protein Mcl-1
Gene (Uniprot):MCL1
Chain IDs:A, B
Chain Length:157
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q07820 Pfam ID:PF00452

Ligand Molecules

9EA

Primary Citation

Structure-guided design of a series of MCL-1 inhibitors with high affinity and selectivity.

Bruncko, M, Wang, L, Sheppard, G.S, Phillips, D.C, Tahir, S.K, Xue, J, Erickson, S, Fidanze, S, Fry, E, Hasvold, L, Jenkins, G.J, Jin, S, Judge, R.A, Kovar, P.J, Madar, D, Nimmer, P, Park, C, Petros, A.M, Rosenberg, S.H, Smith, M.L, Song, X, Sun, C, Tao, Z.F, Wang, X, Xiao, Y, Zhang, H, Tse, C, Leverson, J.D, Elmore, S.W, Souers, A.J.Show

J. Med. Chem. 58 2180 2194 (2015)

PMID: 25679114 DOI: 10.1021/jm501258m

Abstact

Myeloid cell leukemia 1 (MCL-1) is a BCL-2 family protein that has been implicated in the progression and survival of multiple tumor types. Herein we report a series of MCL-1 inhibitors that emanated from a high throughput screening (HTS) hit and progressed via iterative cycles of structure-guided design. Advanced compounds from this series exhibited subnanomolar affinity for MCL-1 and excellent selectivity over other BCL-2 family proteins as well as multiple kinases and GPCRs. In a MCL-1 dependent human tumor cell line, administration of compound 30b rapidly induced caspase activation with associated loss in cell viability. The small molecules described herein thus comprise effective tools for studying MCL-1 biology.

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Primary Citation of related structures