5VH0 image
Deposition Date 2017-04-12
Release Date 2018-04-25
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5VH0
Title:
RHCC in complex with pyrene
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tetrabrachion
Chain IDs:A, B, C, D
Chain Length:52
Number of Molecules:4
Biological Source:Staphylothermus marinus
Primary Citation
Proteinaceous Nano container Encapsulate Polycyclic Aromatic Hydrocarbons.
Sci Rep 9 1058 1058 (2019)
PMID: 30705306 DOI: 10.1038/s41598-018-37323-x

Abstact

Polycyclic aromatic hydrocarbons (PAHs) are toxic, mutagenic and among the most damaging chemical compounds with regard to living organisms. Because of their persistence and wide distribution removal from the environment is an important challenge. Here we report a new Nano container matrix based on the deep sea archaea-derived RHCC-Nanotube (RHCC-NT), which rapidly and preferentially binds low molecular weight PAHs. Under controlled-laboratory conditions and using fluorescence spectroscopy in combination with X-ray crystallography and MD simulations, we quantified the real-time binding of low molecular weight PAHs (2-4 rings) to our substrate. Binding coefficients ranged from 5.4 ± 1.6 (fluorene) to 32 ± 7.0 μM (acenaphthylene) and a binding capacity of 85 pmoles PAH per mg RHCC-NT, or 2.12 μmoles in a standard 25 mg sampler. The uptake rate of pyrene was calculated to be 1.59 nmol/hr∙mol RHCC-NT (at 10  C). Our results clearly show that RHCC-NT is uniquely suited as a monitoring matrix for low molecular weight PAHs.

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