5V92 image
Deposition Date 2017-03-22
Release Date 2017-11-15
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5V92
Keywords:
Title:
Pekin duck egg lysozyme isoform III (DEL-III), orthorhombic form
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.11 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:lysozyme isoform III
Chain IDs:A, B
Chain Length:129
Number of Molecules:2
Biological Source:Anas platyrhynchos
Primary Citation
Structural basis of antigen recognition: crystal structure of duck egg lysozyme.
Acta Crystallogr D Struct Biol 73 910 920 (2017)
PMID: 29095163 DOI: 10.1107/S2059798317013730

Abstact

Duck egg lysozyme (DEL) is a widely used model antigen owing to its capacity to bind with differential affinity to anti-chicken egg lysozyme antibodies. However, no structures of DEL have so far been reported, and the situation had been complicated by the presence of multiple isoforms and conflicting reports of primary sequence. Here, the structures of two DEL isoforms from the eggs of the commonly used Pekin duck (Anas platyrhynchos) are reported. Using structural analyses in combination with mass spectrometry, non-ambiguous DEL primary sequences are reported. Furthermore, the structures and sequences determined here enable rationalization of the binding affinity of DEL for well documented landmark anti-lysozyme antibodies.

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Primary Citation of related structures