ISDA: 5V84

Deposition Date 2017-03-21

Release Date 2017-06-14

Last Version Date 2023-10-04

Entry Detail

PDB ID:

5V84

Keywords:

Transcription/Inhibitor

Title:

CECR2 in complex with Cpd6 (6-allyl-N,2-dimethyl-7-oxo-N-(1-(1-phenylethyl)piperidin-4-yl)-6,7-dihydro-1H-pyrrolo[2,3-c]pyridine-4-carboxamide)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.22

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

I 2 2 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cat eye syndrome critical region protein 2
Gene (Uniprot):CECR2
Chain IDs:A, B, C, D
Chain Length:140
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:Q9BXF3 Pfam ID:PF00439

Ligand Molecules

96V

SO4

Primary Citation

GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2).

Crawford, T.D, Audia, J.E, Bellon, S, Burdick, D.J, Bommi-Reddy, A, Cote, A, Cummings, R.T, Duplessis, M, Flynn, E.M, Hewitt, M, Huang, H.R, Jayaram, H, Jiang, Y, Joshi, S, Kiefer, J.R, Murray, J, Nasveschuk, C.G, Neiss, A, Pardo, E, Romero, F.A, Sandy, P, Sims, R.J, Tang, Y, Taylor, A.M, Tsui, V, Wang, J, Wang, S, Wang, Y, Xu, Z, Zawadzke, L, Zhu, X, Albrecht, B.K, Magnuson, S.R, Cochran, A.G.Show

ACS Med Chem Lett 8 737 741 (2017)

PMID: 28740608 DOI: 10.1021/acsmedchemlett.7b00132

Abstact

The biological function of bromodomains, epigenetic readers of acetylated lysine residues, remains largely unknown. Herein we report our efforts to discover a potent and selective inhibitor of the bromodomain of cat eye syndrome chromosome region candidate 2 (CECR2). Screening of our internal medicinal chemistry collection led to the identification of a pyrrolopyridone chemical lead, and subsequent structure-based drug design led to a potent and selective CECR2 bromodomain inhibitor (GNE-886) suitable for use as an in vitro tool compound.

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Protein

Chemical

Disease

Primary Citation of related structures

Abstact

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