5V6D image
Deposition Date 2017-03-16
Release Date 2017-04-19
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5V6D
Keywords:
TRANSFERASE
Title:
Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate
Biological Source:
Source Organism:
Neisseria gonorrhoeae NCCP11945 (Taxon ID: 521006)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.85 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
5V6D validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoside diphosphate kinase
Gene (Uniprot):ndk
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Chain Length:149
Number of Molecules:16
Biological Source:Neisseria gonorrhoeae NCCP11945
UniProt ID:B4RMG0 Pfam ID:PF00334 EC:2.7.4.6
Ligand Molecules
CIT
EDO
Primary Citation
Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate
To be Published ? ? ? (?)
Primary Citation of related structures
5V6D