5V5K image
Deposition Date 2017-03-14
Release Date 2017-07-19
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5V5K
Keywords:
Title:
Crystal structure of ferritin E65R mutant from hyperthermophilic archaeon Archaeoglobus fulgidus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.08 Å
R-Value Free:
0.27
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 21 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferritin
Gene (Uniprot):AF_0834
Mutagens:E65R
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:162
Number of Molecules:8
Biological Source:Archaeoglobus fulgidus
Ligand Molecules
Primary Citation
Thermophilic Ferritin 24mer Assembly and Nanoparticle Encapsulation Modulated by Interdimer Electrostatic Repulsion.
Biochemistry 56 3596 3606 (2017)
PMID: 28682599 DOI: 10.1021/acs.biochem.7b00296

Abstact

Protein cage self-assembly enables encapsulation and sequestration of small molecules, macromolecules, and nanomaterials for many applications in bionanotechnology. Notably, wild-type thermophilic ferritin from Archaeoglobus fulgidus (AfFtn) exists as a stable dimer of four-helix bundle proteins at a low ionic strength, and the protein forms a hollow assembly of 24 protomers at a high ionic strength (∼800 mM NaCl). This assembly process can also be initiated by highly charged gold nanoparticles (AuNPs) in solution, leading to encapsulation. These data suggest that salt solutions or charged AuNPs can shield unfavorable electrostatic interactions at AfFtn dimer-dimer interfaces, but specific "hot-spot" residues controlling assembly have not been identified. To investigate this further, we computationally designed three AfFtn mutants (E65R, D138K, and A127R) that introduce a single positive charge at sites along the dimer-dimer interface. These proteins exhibited different assembly kinetics and thermodynamics, which were ranked in order of increasing 24mer propensity: A127R < wild type < D138K ≪ E65R. E65R assembled into the 24mer across a wide range of ionic strengths (0-800 mM NaCl), and the dissociation temperature for the 24mer was 98 °C. X-ray crystal structure analysis of the E65R mutant identified a more compact, closed-pore cage geometry. A127R and D138K mutants exhibited wild-type ability to encapsulate and stabilize 5 nm AuNPs, whereas E65R did not encapsulate AuNPs at the same high yields. This work illustrates designed protein cages with distinct assembly and encapsulation properties.

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Primary Citation of related structures