5V58 image
Deposition Date 2017-03-13
Release Date 2018-01-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5V58
Keywords:
Title:
Crystal structure of human prolyl-tRNA synthetase in complex with Aze-SA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bifunctional glutamate/proline--tRNA ligase
Gene (Uniprot):EPRS1
Chain IDs:A
Chain Length:519
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid.
Nat Commun 8 2281 2281 (2017)
PMID: 29273753 DOI: 10.1038/s41467-017-02201-z

Abstact

Hundreds of non-proteinogenic (np) amino acids (AA) are found in plants and can in principle enter human protein synthesis through foods. While aminoacyl-tRNA synthetase (AARS) editing potentially provides a mechanism to reject np AAs, some have pathological associations. Co-crystal structures show that vegetable-sourced azetidine-2-carboxylic acid (Aze), a dual mimic of proline and alanine, is activated by both human prolyl- and alanyl-tRNA synthetases. However, it inserts into proteins as proline, with toxic consequences in vivo. Thus, dual mimicry increases odds for mistranslation through evasion of one but not both tRNA synthetase editing systems.

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Primary Citation of related structures