5V4S image
Deposition Date 2017-03-10
Release Date 2017-04-12
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5V4S
Title:
CryoEM Structure of a Prokaryotic Cyclic Nucleotide-Gated Ion Channel
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transporter, cation channel family / cyclic nucleotide-binding domain multi-domain protein
Chain IDs:A, B, C, D
Chain Length:465
Number of Molecules:4
Biological Source:Leptospira licerasiae serovar Varillal str. VAR 010
Ligand Molecules
Primary Citation
CryoEM structure of a prokaryotic cyclic nucleotide-gated ion channel.
Proc. Natl. Acad. Sci. U.S.A. 114 4430 4435 (2017)
PMID: 28396445 DOI: 10.1073/pnas.1700248114

Abstact

Cyclic nucleotide-gated (CNG) and hyperpolarization-activated cyclic nucleotide-regulated (HCN) ion channels play crucial physiological roles in phototransduction, olfaction, and cardiac pace making. These channels are characterized by the presence of a carboxyl-terminal cyclic nucleotide-binding domain (CNBD) that connects to the channel pore via a C-linker domain. Although cyclic nucleotide binding has been shown to promote CNG and HCN channel opening, the precise mechanism underlying gating remains poorly understood. Here we used cryoEM to determine the structure of the intact LliK CNG channel isolated from Leptospira licerasiae-which shares sequence similarity to eukaryotic CNG and HCN channels-in the presence of a saturating concentration of cAMP. A short S4-S5 linker connects nearby voltage-sensing and pore domains to produce a non-domain-swapped transmembrane architecture, which appears to be a hallmark of this channel family. We also observe major conformational changes of the LliK C-linkers and CNBDs relative to the crystal structures of isolated C-linker/CNBD fragments and the cryoEM structures of related CNG, HCN, and KCNH channels. The conformation of our LliK structure may represent a functional state of this channel family not captured in previous studies.

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Primary Citation of related structures