5V47 image
Entry Detail
PDB ID:
5V47
Keywords:
Title:
Crystal structure of the SR1 domain of lizard sacsin
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-03-08
Release Date:
2017-05-24
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lizard sacsin
Chain IDs:A, B
Chain Length:253
Number of Molecules:2
Biological Source:Anolis carolinensis
Ligand Molecules
Primary Citation
Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations.
J. Biol. Chem. 293 12832 12842 (2018)
PMID: 29945973 DOI: 10.1074/jbc.RA118.003939

Abstact

Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a neurodegenerative disease that is caused by mutations in the SACS gene. The product of this gene is a very large 520-kDa cytoplasmic protein, sacsin, with a ubiquitin-like (Ubl) domain at the N terminus followed by three large sacsin internal repeat (SIRPT) supradomains and C-terminal J and HEPN domains. The SIRPTs are predicted to contain Hsp90-like domains, suggesting a potential chaperone activity. In this work, we report the structures of the Hsp90-like Sr1 domain of SIRPT1 and the N-terminal Ubl domain determined at 1.55- and 2.1-Å resolutions, respectively. The Ubl domain crystallized as a swapped dimer that could be relevant in the context of full-length protein. The Sr1 domain displays the Bergerat protein fold with a characteristic nucleotide-binding pocket, although it binds nucleotides with very low affinity. The Sr1 structure reveals that ARSACS-causing missense mutations (R272H, R272C, and T201K) disrupt protein folding, most likely leading to sacsin degradation. This work lends structural support to the view of sacsin as a molecular chaperone and provides a framework for future studies of this protein.

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Primary Citation of related structures