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5V2A image
Deposition Date 2017-03-03
Release Date 2017-04-05
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5V2A
Title:
Crystal structure of Fab H7.167 in complex with influenza virus hemagglutinin from A/Shanghai/02/2013 (H7N9)
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.66 Å
R-Value Free:
0.33
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
I 21 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A
Chain Length:321
Number of Molecules:1
Biological Source:Influenza A virus (A/chicken/Henan/109/2013(H7N9))
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B
Chain Length:183
Number of Molecules:1
Biological Source:Influenza A virus (A/pigeon/Wuxi/0405007G/2013(H7N9))
Polymer Type:polypeptide(L)
Molecule:Heavy chain of H7.167 antibody
Chain IDs:D (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain (kappa) of H7.167 antibody
Chain IDs:C (auth: L)
Chain Length:221
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
H7N9 influenza virus neutralizing antibodies that possess few somatic mutations.
J. Clin. Invest. 126 1482 1494 (2016)
PMID: 26950424 DOI: 10.1172/JCI85317

Abstact

Avian H7N9 influenza viruses are group 2 influenza A viruses that have been identified as the etiologic agent for a current major outbreak that began in China in 2013 and may pose a pandemic threat. Here, we examined the human H7-reactive antibody response in 75 recipients of a monovalent inactivated A/Shanghai/02/2013 H7N9 vaccine. After 2 doses of vaccine, the majority of donors had memory B cells that secreted IgGs specific for H7 HA, with dominant responses against single HA subtypes, although frequencies of H7-reactive B cells ranged widely between donors. We isolated 12 naturally occurring mAbs with low half-maximal effective concentrations for binding, 5 of which possessed neutralizing and HA-inhibiting activities. The 5 neutralizing mAbs exhibited narrow breadth of reactivity with influenza H7 strains. Epitope-mapping studies using neutralization escape mutant analysis, deuterium exchange mass spectrometry, and x-ray crystallography revealed that these neutralizing mAbs bind near the receptor-binding pocket on HA. All 5 neutralizing mAbs possessed low numbers of somatic mutations, suggesting the clones arose from naive B cells. The most potent mAb, H7.167, was tested as a prophylactic treatment in a mouse intranasal virus challenge study, and systemic administration of the mAb markedly reduced viral lung titers.

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