5V1B image
Deposition Date 2017-03-01
Release Date 2017-06-21
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5V1B
Title:
Structure of PHD1 in complex with 1,2,4-Triazolo-[1,5-a]pyridine
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Egl nine homolog 2
Gene (Uniprot):EGLN2
Chain IDs:A
Chain Length:240
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction.
J. Med. Chem. 60 5663 5672 (2017)
PMID: 28594552 DOI: 10.1021/acs.jmedchem.7b00352

Abstact

Herein we describe the identification of 4-{[1,2,4]triazolo[1,5-a]pyridin-5-yl}benzonitrile-based inhibitors of the hypoxia-inducible factor prolylhydroxylase domain-1 (PHD-1) enzyme. These inhibitors were shown to possess a novel binding mode by X-ray crystallography, in which the triazolo N1 atom coordinates in a hitherto unreported monodentate interaction with the active site Fe2+ ion, while the benzonitrile group accepts a hydrogen-bonding interaction from the side chain residue of Asn315. Further optimization led to potent PHD-1 inhibitors with good physicochemical and pharmacokinetic properties.

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