5UV6 image
Entry Detail
PDB ID:
5UV6
Keywords:
Title:
Crystal structure of human Opioid Binding Protein/Cell Adhesion Molecule Like (OPCML)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-02-19
Release Date:
2018-03-21
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Opioid-binding protein/cell adhesion molecule
Chain IDs:A, B
Chain Length:286
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Inactivating mutations and X-ray crystal structure of the tumor suppressor OPCML reveal cancer-associated functions.
Nat Commun 10 3134 3134 (2019)
PMID: 31316070 DOI: 10.1038/s41467-019-10966-8

Abstact

OPCML, a tumor suppressor gene, is frequently silenced epigenetically in ovarian and other cancers. Here we report, by analysis of databases of tumor sequences, the observation of OPCML somatic missense mutations from various tumor types and the impact of these mutations on OPCML function, by solving the X-ray crystal structure of this glycoprotein to 2.65 Å resolution. OPCML consists of an extended arrangement of three immunoglobulin-like domains and homodimerizes via a network of contacts between membrane-distal domains. We report the generation of a panel of OPCML variants with representative clinical mutations and demonstrate clear phenotypic effects in vitro and in vivo including changes to anchorage-independent growth, interaction with activated cognate receptor tyrosine kinases, cellular migration, invasion in vitro and tumor growth in vivo. Our results suggest that clinically occurring somatic missense mutations in OPCML have the potential to contribute to tumorigenesis in a variety of cancers.

Legend

Protein

Chemical

Disease

Primary Citation of related structures