5UV0 image
Entry Detail
PDB ID:
5UV0
Keywords:
Title:
Crystal Structure of (+)-Limonene Synthase from Citrus sinensis
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-02-17
Release Date:
2017-03-22
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:(+)-limonene synthase
Chain IDs:A
Chain Length:607
Number of Molecules:1
Biological Source:Citrus sinensis
Primary Citation
Functional and Structural Characterization of a (+)-Limonene Synthase from Citrus sinensis.
Biochemistry 56 1706 1715 (2017)
PMID: 28272875 DOI: 10.1021/acs.biochem.7b00143

Abstact

Terpenes make up the largest and most diverse class of natural compounds and have important commercial and medical applications. Limonene is a cyclic monoterpene (C10) present in nature as two enantiomers, (+) and (-), which are produced by different enzymes. The mechanism of production of the (-)-enantiomer has been studied in great detail, but to understand how enantiomeric selectivity is achieved in this class of enzymes, it is important to develop a thorough biochemical description of enzymes that generate (+)-limonene, as well. Here we report the first cloning and biochemical characterization of a (+)-limonene synthase from navel orange (Citrus sinensis). The enzyme obeys classical Michaelis-Menten kinetics and produces exclusively the (+)-enantiomer. We have determined the crystal structure of the apoprotein in an "open" conformation at 2.3 Å resolution. Comparison with the structure of (-)-limonene synthase (Mentha spicata), which is representative of a fully closed conformation (Protein Data Bank entry 2ONG), reveals that the short H-α1 helix moves nearly 5 Å inward upon substrate binding, and a conserved Tyr flips to point its hydroxyl group into the active site.

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