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Entry Detail
PDB ID:
5UKZ
Title:
NMR Solution structure of chemically synthesized antilisterial Pediocin PA-1 M31L analog.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-01-23
Release Date:
2018-06-27
Method Details:
Experimental Method:
Conformers Calculated:
40000
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bacteriocin pediocin PA-1 M31L
Mutations:M31L
Chain IDs:A
Chain Length:44
Number of Molecules:1
Biological Source:Pediococcus acidilactici
Ligand Molecules
Primary Citation
Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof.
Sci Rep 8 9029 9029 (2018)
PMID: 29899567 DOI: 10.1038/s41598-018-27225-3

Abstact

The antimicrobial peptide pediocin PA-1 is a class IIa bacteriocin that inhibits several clinically relevant pathogens including Listeria spp. Here we report the synthesis and characterization of whole pediocin PA-1 and novel analogs thereof using a combination of solid- and solution-phase strategies to overcome difficulties due to instability and undesired reactions. Pediocin PA-1 thus synthesized was a potent inhibitor of Listeria monocytogenes (MIC = 6.8 nM), similar to the bacteriocin produced naturally by Pediococcus acidilactici. Of particular interest is that linear analogs lacking both of the disulfide bridges characterizing pediocin PA-1 were as potent. One linear analog was also a strong inhibitor of Clostridium perfringens, another important food-borne pathogen. These results are discussed in light of conformational information derived from circular dichroism, solution NMR spectroscopy and structure-activity relationship studies.

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Primary Citation of related structures