5UJQ image
Deposition Date 2017-01-18
Release Date 2017-11-29
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5UJQ
Title:
NMR Solution Structure of the Two-component Bacteriocin CbnXY
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bacteriocin
Gene (Uniprot):BN424_pa0050
Chain IDs:A
Chain Length:29
Number of Molecules:1
Biological Source:Carnobacterium maltaromaticum
Ligand Molecules
Primary Citation
Identification and three-dimensional structure of carnobacteriocin XY, a class IIb bacteriocin produced by Carnobacteria.
FEBS Lett. 591 1349 1359 (2017)
PMID: 28391617 DOI: 10.1002/1873-3468.12648

Abstact

In this study, we report that CbnX (33 residues) and CbnY (29 residues) comprise a class IIb (two-component) bacteriocin in Carnobacteria. Individually, CbnX and CbnY are inactive, but together act synergistically to exert a narrow spectrum of activity. The structures of CbnX and CbnY in structure-inducing conditions were determined and strongly resemble other class IIb bacteriocins (i.e., LcnG, PlnEF, PlnJK). CbnX has an extended, amphipathic α-helix and a flexible C terminus. CbnY has two α-helices (one hydrophobic, one amphipathic) connected by a short loop and a cationic C terminus. CbnX and CbnY do not appear to interact directly and likely require a membrane-bound receptor to facilitate formation of the bacteriocin complex. This is the first class IIb bacteriocin reported for Carnobacteria.

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Primary Citation of related structures