5UGY image
Deposition Date 2017-01-10
Release Date 2017-01-25
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5UGY
Title:
Influenza hemagglutinin in complex with a neutralizing antibody
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1
Chain IDs:A, C, E
Chain Length:323
Number of Molecules:3
Biological Source:Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2
Chain IDs:B, D, F
Chain Length:173
Number of Molecules:3
Biological Source:Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CH65 heavy chain
Chain IDs:G (auth: H), H (auth: I), I (auth: J)
Chain Length:227
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CH65 light chain
Gene (Uniprot):IGL@
Chain IDs:J (auth: L), K (auth: M), L (auth: N)
Chain Length:210
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin.
Proc. Natl. Acad. Sci. U.S.A. 108 14216 14221 (2011)
PMID: 21825125 DOI: 10.1073/pnas.1111497108

Abstact

Seasonal antigenic drift of circulating influenza virus leads to a requirement for frequent changes in vaccine composition, because exposure or vaccination elicits human antibodies with limited cross-neutralization of drifted strains. We describe a human monoclonal antibody, CH65, obtained by isolating rearranged heavy- and light-chain genes from sorted single plasma cells, coming from a subject immunized with the 2007 trivalent influenza vaccine. The crystal structure of a complex of the hemagglutinin (HA) from H1N1 strain A/Solomon Islands/3/2006 with the Fab of CH65 shows that the tip of the CH65 heavy-chain complementarity determining region 3 (CDR3) inserts into the receptor binding pocket on HA1, mimicking in many respects the interaction of the physiological receptor, sialic acid. CH65 neutralizes infectivity of 30 out of 36 H1N1 strains tested. The resistant strains have a single-residue insertion near the rim of the sialic-acid pocket. We conclude that broad neutralization of influenza virus can be achieved by antibodies with contacts that mimic those of the receptor.

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Primary Citation of related structures