5UDZ image
Deposition Date 2016-12-29
Release Date 2017-03-22
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5UDZ
Title:
Human LIN28A in complex with let-7f-1 microRNA pre-element
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein lin-28 homolog A
Gene (Uniprot):LIN28A
Chain IDs:A, B
Chain Length:148
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:let-7f-1 pre-element
Chain IDs:C (auth: V), D (auth: W)
Chain Length:25
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
LIN28 Zinc Knuckle Domain Is Required and Sufficient to Induce let-7 Oligouridylation.
Cell Rep 18 2664 2675 (2017)
PMID: 28297670 DOI: 10.1016/j.celrep.2017.02.044

Abstact

LIN28 is an RNA binding protein that plays crucial roles in pluripotency, glucose metabolism, tissue regeneration, and tumorigenesis. LIN28 binds to the let-7 primary and precursor microRNAs through bipartite recognition and induces degradation of let-7 precursors (pre-let-7) by promoting oligouridylation by terminal uridylyltransferases (TUTases). Here, we report that the zinc knuckle domain (ZKD) of mouse LIN28 recruits TUT4 to initiate the oligouridylation of let-7 precursors. Our crystal structure of human LIN28 in complex with a fragment of pre-let-7f-1 determined to 2.0 Å resolution shows that the interaction between ZKD and RNA is constrained to a small cavity with a high druggability score. We demonstrate that the specific interaction between ZKD and pre-let-7 is necessary and sufficient to induce oligouridylation by recruiting the N-terminal fragment of TUT4 (NTUT4) and the formation of a stable ZKD:NTUT4:pre-let-7 ternary complex is crucial for the acquired processivity of TUT4.

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Primary Citation of related structures