5U8R image
Deposition Date 2016-12-14
Release Date 2018-02-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5U8R
Title:
Structure of the ectodomain of the human Type 1 insulin-like growth factor receptor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Insulin-like growth factor 1 receptor
Gene (Uniprot):IGF1R
Mutations:residues 718-741 are replaced with the sequence AGNN
Chain IDs:A
Chain Length:885
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fv 24-60 heavy chain
Chain IDs:B (auth: H)
Chain Length:126
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fv 24-60 light chain
Chain IDs:C (auth: L)
Chain Length:108
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
How ligand binds to the type 1 insulin-like growth factor receptor.
Nat Commun 9 821 821 (2018)
PMID: 29483580 DOI: 10.1038/s41467-018-03219-7

Abstact

Human type 1 insulin-like growth factor receptor is a homodimeric receptor tyrosine kinase that signals into pathways directing normal cellular growth, differentiation and proliferation, with aberrant signalling implicated in cancer. Insulin-like growth factor binding is understood to relax conformational restraints within the homodimer, initiating transphosphorylation of the tyrosine kinase domains. However, no three-dimensional structures exist for the receptor ectodomain to inform atomic-level understanding of these events. Here, we present crystal structures of the ectodomain in apo form and in complex with insulin-like growth factor I, the latter obtained by crystal soaking. These structures not only provide a wealth of detail of the growth factor interaction with the receptor's primary ligand-binding site but also indicate that ligand binding separates receptor domains by a mechanism of induced fit. Our findings are of importance to the design of agents targeting IGF-1R and its partner protein, the human insulin receptor.

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Primary Citation of related structures