5U0S image
Entry Detail
PDB ID:
5U0S
EMDB ID:
Title:
Cryo-EM structure of the Mediator-RNAPII complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-11-26
Release Date:
2017-03-08
Method Details:
Experimental Method:
Resolution:
7.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 27
Chain IDs:M (auth: 2)
Chain Length:273
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 31
Chain IDs:L (auth: 3)
Chain Length:139
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 4
Chain IDs:I (auth: D)
Chain Length:135
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 6
Chain IDs:A (auth: F)
Chain Length:142
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 7
Chain IDs:J (auth: G)
Chain Length:376
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 8
Chain IDs:B (auth: H)
Chain Length:200
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 9
Chain IDs:N (auth: I)
Chain Length:113
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 10
Chain IDs:P (auth: J)
Chain Length:71
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 11
Chain IDs:F (auth: K)
Chain Length:116
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 14
Chain IDs:H (auth: N)
Chain Length:931
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 17
Chain IDs:C (auth: Q)
Chain Length:545
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 18
Chain IDs:D (auth: R)
Chain Length:207
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 19
Chain IDs:O (auth: S)
Chain Length:139
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 20
Chain IDs:E (auth: T)
Chain Length:193
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 21
Chain IDs:K (auth: U)
Chain Length:138
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:Mediator complex subunit 22
Chain IDs:G (auth: V)
Chain Length:136
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb1
Chain IDs:Q (auth: a)
Chain Length:1752
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb2
Chain IDs:R (auth: b)
Chain Length:1210
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb3
Chain IDs:S (auth: c)
Chain Length:297
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb4
Chain IDs:T (auth: d)
Chain Length:135
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb5
Chain IDs:U (auth: e)
Chain Length:210
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb6
Chain IDs:V (auth: f)
Chain Length:142
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb7
Chain IDs:W (auth: g)
Chain Length:376
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb8
Chain IDs:X (auth: h)
Chain Length:200
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb9
Chain IDs:Y (auth: i)
Chain Length:113
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb10
Chain IDs:Z (auth: j)
Chain Length:71
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb11
Chain IDs:AA (auth: k)
Chain Length:116
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Description:RNA polymerase II subunit Rpb12
Chain IDs:BA (auth: l)
Chain Length:63
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Ligand Molecules
Primary Citation
Mediator structure and rearrangements required for holoenzyme formation.
Nature 544 196 201 (2017)
PMID: 28241144 DOI: 10.1038/nature21393

Abstact

The conserved Mediator co-activator complex has an essential role in the regulation of RNA polymerase II transcription in all eukaryotes. Understanding the structure and interactions of Mediator is crucial for determining how the complex influences transcription initiation and conveys regulatory information to the basal transcription machinery. Here we present a 4.4 Å resolution cryo-electron microscopy map of Schizosaccharomyces pombe Mediator in which conserved Mediator subunits are individually resolved. The essential Med14 subunit works as a central backbone that connects the Mediator head, middle and tail modules. Comparison with a 7.8 Å resolution cryo-electron microscopy map of a Mediator-RNA polymerase II holoenzyme reveals that changes in the structure of Med14 facilitate a large-scale Mediator rearrangement that is essential for holoenzyme formation. Our study suggests that access to different conformations and crosstalk between structural elements are essential for the Mediator regulation mechanism, and could explain the capacity of the complex to integrate multiple regulatory signals.

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Primary Citation of related structures