5U0P image
Deposition Date 2016-11-26
Release Date 2017-03-08
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5U0P
Keywords:
Title:
Cryo-EM structure of the transcriptional Mediator
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 27
Gene (Uniprot):med27
Chain IDs:N (auth: 2)
Chain Length:273
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 31
Gene (Uniprot):med31
Chain IDs:L (auth: 3)
Chain Length:139
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 4
Chain IDs:I (auth: D)
Chain Length:239
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 6
Gene (Uniprot):med6
Chain IDs:B (auth: F)
Chain Length:216
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 7
Gene (Uniprot):med7
Chain IDs:J (auth: G)
Chain Length:376
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 8
Gene (Uniprot):med8
Chain IDs:C (auth: H)
Chain Length:200
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 9
Gene (Uniprot):SPAC24C9.04
Chain IDs:M (auth: I)
Chain Length:121
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 10
Chain IDs:P (auth: J)
Chain Length:132
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 11
Gene (Uniprot):med11
Chain IDs:G (auth: K)
Chain Length:116
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 14
Gene (Uniprot):med14
Chain IDs:A (auth: N)
Chain Length:931
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 17
Gene (Uniprot):med17
Chain IDs:D (auth: Q)
Chain Length:545
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 18
Gene (Uniprot):med18
Chain IDs:E (auth: R)
Chain Length:207
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 19
Chain IDs:O (auth: S)
Chain Length:139
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 20
Gene (Uniprot):med20
Chain IDs:F (auth: T)
Chain Length:193
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 21
Gene (Uniprot):med21
Chain IDs:K (auth: U)
Chain Length:138
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Mediator complex subunit 22
Gene (Uniprot):med22
Chain IDs:H (auth: V)
Chain Length:136
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Ligand Molecules
Primary Citation
Mediator structure and rearrangements required for holoenzyme formation.
Nature 544 196 201 (2017)
PMID: 28241144 DOI: 10.1038/nature21393

Abstact

The conserved Mediator co-activator complex has an essential role in the regulation of RNA polymerase II transcription in all eukaryotes. Understanding the structure and interactions of Mediator is crucial for determining how the complex influences transcription initiation and conveys regulatory information to the basal transcription machinery. Here we present a 4.4 Å resolution cryo-electron microscopy map of Schizosaccharomyces pombe Mediator in which conserved Mediator subunits are individually resolved. The essential Med14 subunit works as a central backbone that connects the Mediator head, middle and tail modules. Comparison with a 7.8 Å resolution cryo-electron microscopy map of a Mediator-RNA polymerase II holoenzyme reveals that changes in the structure of Med14 facilitate a large-scale Mediator rearrangement that is essential for holoenzyme formation. Our study suggests that access to different conformations and crosstalk between structural elements are essential for the Mediator regulation mechanism, and could explain the capacity of the complex to integrate multiple regulatory signals.

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Primary Citation of related structures