5TZT image
Entry Detail
PDB ID:
5TZT
Keywords:
Title:
Crystal structure of human CD47 ECD bound to Fab of C47B161
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-11-22
Release Date:
2017-03-15
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.32
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Heavy Chain of Fab C47B161
Chain IDs:B (auth: A), D (auth: H)
Chain Length:226
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Light Chain of Fab C47B161
Chain IDs:A (auth: B), C (auth: L)
Chain Length:219
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Leukocyte surface antigen CD47
Mutations:C15G
Chain IDs:E (auth: C), F (auth: D)
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA E GLN modified residue
Primary Citation
Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies.
Blood Cancer J 7 e536 e536 (2017)
PMID: 28234345 DOI: 10.1038/bcj.2017.7

Abstact

CD47, a broadly expressed cell surface protein, inhibits cell phagocytosis via interaction with phagocyte-expressed SIRPα. A variety of hematological malignancies demonstrate elevated CD47 expression, suggesting that CD47 may mediate immune escape. We discovered three unique CD47-SIRPα blocking anti-CD47 monoclonal antibodies (mAbs) with low nano-molar affinity to human and cynomolgus monkey CD47, and no hemagglutination and platelet aggregation activity. To characterize the anti-cancer activity elicited by blocking CD47, the mAbs were cloned into effector function silent and competent Fc backbones. Effector function competent mAbs demonstrated potent activity in vitro and in vivo, while effector function silent mAbs demonstrated minimal activity, indicating that blocking CD47 only leads to a therapeutic effect in the presence of Fc effector function. A non-human primate study revealed that the effector function competent mAb IgG1 C47B222-(CHO) decreased red blood cells (RBC), hematocrit and hemoglobin by >40% at 1 mg/kg, whereas the effector function silent mAb IgG2σ C47B222-(CHO) had minimal impact on RBC indices at 1 and 10 mg/kg. Taken together, our findings suggest that targeting CD47 is an attractive therapeutic anti-cancer approach. However, the anti-cancer activity observed with anti-CD47 mAbs is Fc effector dependent as are the side effects observed on RBC indices.

Legend

Protein

Chemical

Disease

Primary Citation of related structures