5TZG image
Deposition Date 2016-11-21
Release Date 2017-04-19
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5TZG
Title:
Structure of the BldD CTD(D116A)-(c-di-GMP)2, form 2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA-binding protein
Gene (Uniprot):SVEN_1089
Mutations:D116A
Chain IDs:A (auth: C), B (auth: A)
Chain Length:91
Number of Molecules:2
Biological Source:Streptomyces venezuelae
Primary Citation
The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Nucleic Acids Res. 45 6923 6933 (2017)
PMID: 28449057 DOI: 10.1093/nar/gkx287

Abstact

Streptomyces are ubiquitous soil bacteria that undergo a complex developmental transition coinciding with their production of antibiotics. This transition is controlled by binding of a novel tetrameric form of the second messenger, 3΄-5΄ cyclic diguanylic acid (c-di-GMP) to the master repressor, BldD. In all domains of life, nucleotide-based second messengers allow a rapid integration of external and internal signals into regulatory pathways that control cellular responses to changing conditions. c-di-GMP can assume alternative oligomeric states to effect different functions, binding to effector proteins as monomers, intercalated dimers or, uniquely in the case of BldD, as a tetramer. However, at physiological concentrations c-di-GMP is a monomer and little is known about how higher oligomeric complexes assemble on effector proteins and if intermediates in assembly pathways have regulatory significance. Here, we show that c-di-GMP binds BldD using an ordered, sequential mechanism and that BldD function necessitates the assembly of the BldD2-(c-di-GMP)4 complex.

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