5TZF image
Entry Detail
PDB ID:
5TZF
Title:
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-11-21
Release Date:
2017-04-19
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA-binding protein
Mutations:D166A
Chain IDs:A (auth: J), B, C (auth: E), D, E (auth: I), F (auth: H), G (auth: N), H (auth: M)
Chain Length:91
Number of Molecules:8
Biological Source:Streptomyces venezuelae
Ligand Molecules
Primary Citation
The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Nucleic Acids Res. 45 6923 6933 (2017)
PMID: 28449057 DOI: 10.1093/nar/gkx287

Abstact

Streptomyces are ubiquitous soil bacteria that undergo a complex developmental transition coinciding with their production of antibiotics. This transition is controlled by binding of a novel tetrameric form of the second messenger, 3΄-5΄ cyclic diguanylic acid (c-di-GMP) to the master repressor, BldD. In all domains of life, nucleotide-based second messengers allow a rapid integration of external and internal signals into regulatory pathways that control cellular responses to changing conditions. c-di-GMP can assume alternative oligomeric states to effect different functions, binding to effector proteins as monomers, intercalated dimers or, uniquely in the case of BldD, as a tetramer. However, at physiological concentrations c-di-GMP is a monomer and little is known about how higher oligomeric complexes assemble on effector proteins and if intermediates in assembly pathways have regulatory significance. Here, we show that c-di-GMP binds BldD using an ordered, sequential mechanism and that BldD function necessitates the assembly of the BldD2-(c-di-GMP)4 complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures