ISDA

Deposition Date 2016-11-14

Release Date 2017-03-15

Last Version Date 2023-10-04

Entry Detail

PDB ID:

5TWM

Keywords:

TRANSFERASE/TRANSFERASE inhibitor

Title:

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 L30S NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 5-[3-(tert-butylcarbamoyl)phenyl]-6-(ethylamino)-2-(4-fluorophenyl)-N-methylfuro[2,3-b]pyridine-3-carboxamide

Biological Source:

Source Organism:

Hepatitis C virus genotype 2a (isolate JFH-1) (Taxon ID: 356411)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.97 Å

R-Value Free:

0.20

R-Value Work:

0.16

R-Value Observed:

0.17

Space Group:

C 2 2 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:NS5B RNA-dependent RNA POLYMERASE
Mutations:L30S
Chain IDs:A
Chain Length:574
Number of Molecules:1
Biological Source:Hepatitis C virus genotype 2a (isolate JFH-1)

UniProt ID:Q99IB8 Pfam ID:PF00998 EC:3.4.21.98

Ligand Molecules

7NG

PE5

PG4

SO4

Primary Citation

The discovery of a pan-genotypic, primer grip inhibitor of HCV NS5B polymerase.

Eastman, K.J, Parcella, K, Yeung, K.S, Grant-Young, K.A, Zhu, J, Wang, T, Zhang, Z, Yin, Z, Beno, B.R, Sheriff, S, Kish, K, Tredup, J, Jardel, A.G, Halan, V, Ghosh, K, Parker, D, Mosure, K, Fang, H, Wang, Y.K, Lemm, J, Zhuo, X, Hanumegowda, U, Rigat, K, Donoso, M, Tuttle, M, Zvyaga, T, Haarhoff, Z, Meanwell, N.A, Soars, M.G, Roberts, S.B, Kadow, J.F.Show

Medchemcomm 8 796 806 (2017)

PMID: 30108798 DOI: 10.1039/c6md00636a

Abstact

The development of a series of novel 7-azabenzofurans exhibiting pan-genotype inhibition of HCV NS5B polymerase via binding to the primer grip site is presented. Many challenges, including poor oral bioavailability, high clearance, bioactivation, high human serum shift, and metabolic stability were encountered and overcome through SAR studies. This work culminated in the selection of BMS-986139 (43) as a preclinical candidate.

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Primary Citation of related structures