5TW2 image
Entry Detail
PDB ID:
5TW2
Title:
Structure of mouse CD1d with bound alpha-galactosylsphingamide JG168
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-11-11
Release Date:
2017-09-20
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antigen-presenting glycoprotein CD1d1
Chain IDs:A
Chain Length:285
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d.
Sci Rep 7 4276 4276 (2017)
PMID: 28655912 DOI: 10.1038/s41598-017-04461-7

Abstact

Invariant Natural Killer T-cells (iNKT-cells) are an attractive target for immune response modulation, as upon CD1d-mediated stimulation with KRN7000, a synthetic α-galactosylceramide, they produce a vast amount of cytokines. Here we present a synthesis that allows swift modification of the phytosphingosine side chain by amidation of an advanced methyl ester precursor. The resulting KRN7000 derivatives, termed α-galactosylsphingamides, were evaluated for their capacity to stimulate iNKT-cells. While introduction of the amide-motif in the phytosphingosine chain is tolerated for CD1d binding and TCR recognition, the studied α-galactosylsphingamides showed compromised antigenic properties.

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