5TVO image
Entry Detail
PDB ID:
5TVO
Keywords:
Title:
Crystal structure of Trypanosoma brucei AdoMetDC-delta26 monomer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-11-09
Release Date:
2016-12-28
Method Details:
Experimental Method:
Resolution:
1.48 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:S-adenosylmethionine decarboxylase alpha chain
Chain IDs:A
Chain Length:285
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:S-adenosylmethionine decarboxylase proenzyme
Chain IDs:B
Chain Length:59
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Ligand Molecules
Primary Citation
Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog.
Elife 5 ? ? (2016)
PMID: 27977001 DOI: 10.7554/eLife.20198

Abstact

Catalytically inactive enzyme paralogs occur in many genomes. Some regulate their active counterparts but the structural principles of this regulation remain largely unknown. We report X-ray structures of Trypanosoma brucei S-adenosylmethionine decarboxylase alone and in functional complex with its catalytically dead paralogous partner, prozyme. We show monomeric TbAdoMetDC is inactive because of autoinhibition by its N-terminal sequence. Heterodimerization with prozyme displaces this sequence from the active site through a complex mechanism involving a cis-to-trans proline isomerization, reorganization of a β-sheet, and insertion of the N-terminal α-helix into the heterodimer interface, leading to enzyme activation. We propose that the evolution of this intricate regulatory mechanism was facilitated by the acquisition of the dimerization domain, a single step that can in principle account for the divergence of regulatory schemes in the AdoMetDC enzyme family. These studies elucidate an allosteric mechanism in an enzyme and a plausible scheme by which such complex cooperativity evolved.

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Primary Citation of related structures