5TUD image
Deposition Date 2016-11-05
Release Date 2017-07-26
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5TUD
Title:
Structural Insights into the Extracellular Recognition of the Human Serotonin 2B Receptor by an Antibody
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:5-hydroxytryptamine receptor 2B,Soluble cytochrome b562 chimera
Gene (Uniprot):cybC, HTR2B
Mutagens:M144W, M1007W, H1102I, R1106L
Chain IDs:A, D
Chain Length:457
Number of Molecules:2
Biological Source:Homo sapiens, Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Anti-5-HT2B Fab light chain
Chain IDs:B, E
Chain Length:213
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Anti-5-HT2B Fab heavy chain
Chain IDs:C, F
Chain Length:236
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural insights into the extracellular recognition of the human serotonin 2B receptor by an antibody.
Proc. Natl. Acad. Sci. U.S.A. 114 8223 8228 (2017)
PMID: 28716900 DOI: 10.1073/pnas.1700891114

Abstact

Monoclonal antibodies provide an attractive alternative to small-molecule therapies for a wide range of diseases. Given the importance of G protein-coupled receptors (GPCRs) as pharmaceutical targets, there has been an immense interest in developing therapeutic monoclonal antibodies that act on GPCRs. Here we present the 3.0-Å resolution structure of a complex between the human 5-hydroxytryptamine 2B (5-HT2B) receptor and an antibody Fab fragment bound to the extracellular side of the receptor, determined by serial femtosecond crystallography with an X-ray free-electron laser. The antibody binds to a 3D epitope of the receptor that includes all three extracellular loops. The 5-HT2B receptor is captured in a well-defined active-like state, most likely stabilized by the crystal lattice. The structure of the complex sheds light on the mechanism of selectivity in extracellular recognition of GPCRs by monoclonal antibodies.

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Primary Citation of related structures