5TS5 image
Entry Detail
PDB ID:
5TS5
Keywords:
Title:
Crystal structure of L-amino acid oxidase from Bothrops atrox
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-10-27
Release Date:
2017-04-26
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Amine oxidase
Chain IDs:A, B, C, D
Chain Length:484
Number of Molecules:4
Biological Source:Bothrops atrox
Primary Citation
Crystal structure and molecular dynamics studies of L-amino acid oxidase from Bothrops atrox.
Toxicon 128 50 59 (2017)
PMID: 28137621 DOI: 10.1016/j.toxicon.2017.01.017

Abstact

L-amino acid oxidases (LAAOs) are dimeric flavoproteins that catalyze the deamination of L-amino acid to α-keto acid, producing ammonia and hydrogen peroxide. In this study, we report the crystal structure and molecular dynamics simulations of LAAO from the venom of Bothrops atrox (BatroxLAAO). BatroxLAAO presents several biological and pharmacological properties with promising biomedical applications. BatroxLAAO structure contains the highly conserved structural pattern of LAAOs comprising a FAD-binding domain, substrate-binding domain and helical domain, and a dimeric arrangement that can be stabilized by zinc. Also, molecular dynamics results show an asymmetric behavior, and a direct communication between FAD- and substrate-binding domains of counterpart subunits. These findings shed light on the structural role of dimerization to catalytic mechanism of SV-LAAOs.

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