5TRD image
Deposition Date 2016-10-26
Release Date 2016-11-23
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5TRD
Keywords:
TRANSFERASE/DNA
Title:
Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
Biological Source:
Source Organism:
Thermoplasma acidophilum (Taxon ID: 273075)
Thermoplasma acidophilum (Taxon ID: 2303)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
5TRD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Riboflavin kinase
Gene (Uniprot):ribK
Chain IDs:A, B
Chain Length:230
Number of Molecules:2
Biological Source:Thermoplasma acidophilum
UniProt ID:Q9HJA6 Pfam ID:PF13545, PF01982 EC:2.7.1.161
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*TP*TP*AP*CP*TP*AP*AP*TP*TP*CP*AP*CP*GP*AP*GP*TP*AP*A)-3')
Chain IDs:C (auth: G)
Chain Length:19
Number of Molecules:1
Biological Source:Thermoplasma acidophilum
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*TP*TP*AP*CP*TP*CP*GP*TP*GP*AP*AP*TP*TP*AP*GP*TP*AP*A)-3')
Chain IDs:D (auth: H)
Chain Length:19
Number of Molecules:1
Biological Source:Thermoplasma acidophilum
Ligand Molecules
CTP
NA
Primary Citation
Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
To be published ? ? ? (?)
Primary Citation of related structures
5TRD