5TP9 image
Deposition Date 2016-10-20
Release Date 2016-11-30
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5TP9
Title:
Structure of the human GluN1/GluN2A LBD in complex with compound 2 (GNE9178)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutamate receptor ionotropic, NMDA 2A
Gene (Uniprot):GRIN2A
Chain IDs:A
Chain Length:285
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Glutamate receptor ionotropic, NMDA 1
Gene (Uniprot):GRIN1
Chain IDs:B
Chain Length:293
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
GluN2A-Selective Pyridopyrimidinone Series of NMDAR Positive Allosteric Modulators with an Improved in Vivo Profile.
ACS Med Chem Lett 8 84 89 (2017)
PMID: 28105280 DOI: 10.1021/acsmedchemlett.6b00388

Abstact

The N-methyl-d-aspartate receptor (NMDAR) is an ionotropic glutamate receptor, gated by the endogenous coagonists glutamate and glycine, permeable to Ca2+ and Na+. NMDAR dysfunction is associated with numerous neurological and psychiatric disorders, including schizophrenia, depression, and Alzheimer's disease. Recently, we have disclosed GNE-0723 (1), a GluN2A subunit-selective and brain-penetrant positive allosteric modulator (PAM) of NMDARs. This work highlights the discovery of a related pyridopyrimidinone core with distinct structure-activity relationships, despite the structural similarity to GNE-0723. GNE-5729 (13), a pyridopyrimidinone-based NMDAR PAM, was identified with both an improved pharmacokinetic profile and increased selectivity against AMPARs. We also include X-ray structure analysis and modeling to propose hypotheses for the activity and selectivity differences.

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Primary Citation of related structures