5TOK image
Deposition Date 2016-10-17
Release Date 2017-02-22
Last Version Date 2024-12-25
Entry Detail
PDB ID:
5TOK
Title:
Crystal structure of the RSV F glycoprotein in complex with the neutralizing single-domain antibody F-VHH-L66
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0, Fibritin chimera
Gene (Uniprot):F
Mutagens:S155C, S190F, V207L, S290C, I379V, M447V
Chain IDs:A, B, C
Chain Length:550
Number of Molecules:3
Biological Source:Human respiratory syncytial virus
Polymer Type:polypeptide(L)
Molecule:Single-domain antibody F-VHH-L66
Chain IDs:D, E, F
Chain Length:131
Number of Molecules:3
Biological Source:Lama glama
Primary Citation
Potent single-domain antibodies that arrest respiratory syncytial virus fusion protein in its prefusion state.
Nat Commun 8 14158 14158 (2017)
PMID: 28194013 DOI: 10.1038/ncomms14158

Abstact

Human respiratory syncytial virus (RSV) is the main cause of lower respiratory tract infections in young children. The RSV fusion protein (F) is highly conserved and is the only viral membrane protein that is essential for infection. The prefusion conformation of RSV F is considered the most relevant target for antiviral strategies because it is the fusion-competent form of the protein and the primary target of neutralizing activity present in human serum. Here, we describe two llama-derived single-domain antibodies (VHHs) that have potent RSV-neutralizing activity and bind selectively to prefusion RSV F with picomolar affinity. Crystal structures of these VHHs in complex with prefusion F show that they recognize a conserved cavity formed by two F protomers. In addition, the VHHs prevent RSV replication and lung infiltration of inflammatory monocytes and T cells in RSV-challenged mice. These prefusion F-specific VHHs represent promising antiviral agents against RSV.

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