5TO3 image
Entry Detail
PDB ID:
5TO3
Keywords:
Title:
Crystal structure of thrombin mutant W215A/E217A fused to EGF456 of thrombomodulin via a 31-residue linker and bound to PPACK
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-10-16
Release Date:
2017-03-29
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Prothrombin
Chain IDs:A
Chain Length:46
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Prothrombin,Thrombomodulin
Mutations:W215A, E217A
Chain IDs:B
Chain Length:409
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MAN C MAN -D
NAG G NAG -D
Peptide-like Molecules
PRD_000020
Primary Citation
Rational Design of Protein C Activators.
Sci Rep 7 44596 44596 (2017)
PMID: 28294177 DOI: 10.1038/srep44596

Abstact

In addition to its procoagulant and proinflammatory functions mediated by cleavage of fibrinogen and PAR1, the trypsin-like protease thrombin activates the anticoagulant protein C in a reaction that requires the cofactor thrombomodulin and the endothelial protein C receptor. Once in the circulation, activated protein C functions as an anticoagulant, anti-inflammatory and regenerative factor. Hence, availability of a protein C activator would afford a therapeutic for patients suffering from thrombotic disorders and a diagnostic tool for monitoring the level of protein C in plasma. Here, we present a fusion protein where thrombin and the EGF456 domain of thrombomodulin are connected through a peptide linker. The fusion protein recapitulates the functional and structural properties of the thrombin-thrombomodulin complex, prolongs the clotting time by generating pharmacological quantities of activated protein C and effectively diagnoses protein C deficiency in human plasma. Notably, these functions do not require exogenous thrombomodulin, unlike other anticoagulant thrombin derivatives engineered to date. These features make the fusion protein an innovative step toward the development of protein C activators of clinical and diagnostic relevance.

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Primary Citation of related structures