5TJH image
Entry Detail
PDB ID:
5TJH
Keywords:
Title:
hUGDH A136M Substitution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-10-04
Release Date:
2016-11-02
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:UDP-glucose 6-dehydrogenase
Mutations:A136M
Chain IDs:A, B, C, D, E, F
Chain Length:494
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Allostery and Hysteresis Are Coupled in Human UDP-Glucose Dehydrogenase.
Biochemistry 56 202 211 (2017)
PMID: 27966912 DOI: 10.1021/acs.biochem.6b01044

Abstact

Human UDP-glucose dehydrogenase (hUGDH) is regulated by an atypical allosteric mechanism in which the feedback inhibitor UDP-xylose (UDP-Xyl) competes with the substrate for the active site. Binding of UDP-Xyl triggers the T131-loop/α6 allosteric switch, which converts the hexameric structure of hUGDH into an inactive, horseshoe-shaped complex (EΩ). This allosteric transition buries residue A136 in the protein core to produce a subunit interface that favors the EΩ structure. Here we use a methionine substitution to prevent the burial of A136 and trap the T131-loop/α6 switch in the active conformation. We show that hUGDHA136M does not exhibit substrate cooperativity, which is strong evidence that the methionine substitution prevents the formation of the low-UDP-Glc-affinity EΩ state. In addition, the inhibitor affinity of hUGDHA136M is reduced 14-fold, which most likely represents the Ki for competitive inhibition in the absence of the allosteric transition to the higher-affinity EΩ state. hUGDH also displays a lag in progress curves, which is caused by a slow, substrate-induced isomerization that activates the enzyme. Stopped-flow analysis shows that hUGDHA136M does not exhibit hysteresis, which suggests that the T131-loop/α6 switch is the source of the slow isomerization. This interpretation is supported by the 2.05 Å resolution crystal structure of hUGDHA136M, which shows that the A136M substitution has stabilized the active conformation of the T131-loop/α6 allosteric switch. This work shows that the T131-loop/α6 allosteric switch couples allostery and hysteresis in hUGDH.

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