5TIU image
Deposition Date 2016-10-03
Release Date 2017-01-11
Last Version Date 2024-04-03
Entry Detail
PDB ID:
5TIU
Title:
Crystal structure of SYK kinase domain with inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein kinase SYK
Gene (Uniprot):SYK
Chain IDs:A
Chain Length:291
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Carboxamide Spleen Tyrosine Kinase (Syk) Inhibitors: Leveraging Ground State Interactions To Accelerate Optimization.
ACS Med Chem Lett 7 1151 1155 (2016)
PMID: 27994755 DOI: 10.1021/acsmedchemlett.6b00353

Abstact

Optimization of a series of highly potent and kinome selective carbon-linked carboxamide spleen tyrosine kinase (Syk) inhibitors with favorable drug-like properties is described. A pervasive Ames liability in an analogous nitrogen-linked carboxamide series was obviated by replacement with a carbon-linked moiety. Initial efforts lacked on-target potency, likely due to strain induced between the hinge binding amide and solvent front heterocycle. Consideration of ground state and bound state energetics allowed rapid realization of improved solvent front substituents affording subnanomolar Syk potency and high kinome selectivity. These molecules were also devoid of mutagenicity risk as assessed via the Ames test using the TA97a Salmonella strain.

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Chemical

Disease

Primary Citation of related structures
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