5THH image
Entry Detail
PDB ID:
5THH
Keywords:
Title:
Crystal structure of a human tyrosyl-tRNA synthetase mutant
Biological Source:
PDB Version:
Deposition Date:
2016-09-29
Release Date:
2017-05-17
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tyrosine--tRNA ligase, cytoplasmic
Mutations:E196K
Chain IDs:A
Chain Length:339
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res. 45 8091 8104 (2017)
PMID: 28531329 DOI: 10.1093/nar/gkx455

Abstact

While having multiple aminoacyl-tRNA synthetases implicated in Charcot-Marie-Tooth (CMT) disease suggests a common mechanism, a defect in enzymatic activity is not shared among the CMT-causing mutants. Protein misfolding is a common hypothesis underlying the development of many neurological diseases. Its process usually involves an initial reduction in protein stability and then the subsequent oligomerization and aggregation. Here, we study the structural effect of three CMT-causing mutations in tyrosyl-tRNA synthetase (TyrRS or YARS). Through various approaches, we found that the mutations do not induce changes in protein secondary structures, or shared effects on oligomerization state and stability. However, all mutations provide access to a surface masked in the wild-type enzyme, and that access correlates with protein misinteraction. With recent data on another CMT-linked tRNA synthetase, we suggest that an inherent plasticity, engendering the formation of alternative stable conformations capable of aberrant interactions, links the tRNA synthetase family to CMT.

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Primary Citation of related structures