ISDA: 5TGA

Deposition Date 2016-09-27

Release Date 2016-11-23

Last Version Date 2025-12-17

Entry Detail

PDB ID:

5TGA

Keywords:

RIBOSOME

Title:

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Biological Source:

Source Organism(s):

synthetic construct (Taxon ID: 32630)
Saccharomyces cerevisiae (Taxon ID: 4932)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.30 Å

R-Value Free:

0.26

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:25S ribosomal RNA
Chain IDs:JA (auth: 1), KD (auth: 5)
Chain Length:3394
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:A (auth: 2)
Chain Length:1829
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:KA (auth: 3), LD (auth: 7)
Chain Length:121
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5.8S ribosomal RNA
Chain IDs:LA (auth: 4), MD (auth: 8)
Chain Length:158
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:BC (auth: 6)
Chain Length:1800
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:Peptidyl-tRNA analog ACCA-Pro
Chain IDs:GF (auth: A), HF (auth: B)
Chain Length:3
Number of Molecules:2
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS10A
Gene (Uniprot):RPS10A
Chain IDs:L (auth: C0)
Chain Length:96
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q08745 Pfam ID:PF03501

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS17A
Gene (Uniprot):RPS11A
Chain IDs:M (auth: C1), NC (auth: c1)
Chain Length:155
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX47 Pfam ID:PF16205, PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS12
Gene (Uniprot):RPS12
Chain IDs:N (auth: C2), OC (auth: c2)
Chain Length:124
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P48589 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:O (auth: C3), PC (auth: c3)
Chain Length:150
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05756 Pfam ID:PF08069, PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS11B
Gene (Uniprot):RPS14B
Chain IDs:P (auth: C4), QC (auth: c4)
Chain Length:128
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39516 Pfam ID:PF00411

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS19
Gene (Uniprot):RPS15
Chain IDs:Q (auth: C5), RC (auth: c5)
Chain Length:135
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q01855 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS9A
Gene (Uniprot):RPS16A
Chain IDs:R (auth: C6), SC (auth: c6)
Chain Length:142
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX51 Pfam ID:PF00380

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17-A
Chain IDs:S (auth: C7), TC (auth: c7)
Chain Length:125
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14127 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18-A
Gene (Uniprot):RPS18A
Chain IDs:T (auth: C8), UC (auth: c8)
Chain Length:145
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX55 Pfam ID:PF00416

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19-A
Gene (Uniprot):RPS19A
Chain IDs:U (auth: C9), VC (auth: c9)
Chain Length:143
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P07280 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS10
Gene (Uniprot):RPS20
Chain IDs:V (auth: D0), WC (auth: d0)
Chain Length:110
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38701 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21-A
Gene (Uniprot):RPS21A
Chain IDs:W (auth: D1), XC (auth: d1)
Chain Length:87
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0V8 Pfam ID:PF01249

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S22-A
Gene (Uniprot):RPS22A
Chain IDs:X (auth: D2), YC (auth: d2)
Chain Length:129
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0W1 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23-A
Gene (Uniprot):RPS23A
Chain IDs:Y (auth: D3), ZC (auth: d3)
Chain Length:144
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX29 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24-A
Gene (Uniprot):RPS24A
Chain IDs:Z (auth: D4), AD (auth: d4)
Chain Length:134
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX31 Pfam ID:PF01282

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS25A
Gene (Uniprot):RPS25A
Chain IDs:AA (auth: D5), BD (auth: d5)
Chain Length:70
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E792 Pfam ID:PF03297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26-B
Gene (Uniprot):RPS26B
Chain IDs:BA (auth: D6), CD (auth: d6)
Chain Length:97
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39939 Pfam ID:PF01283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27-A
Gene (Uniprot):RPS27A
Chain IDs:CA (auth: D7), DD (auth: d7)
Chain Length:81
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P35997 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28-A
Gene (Uniprot):RPS28A
Chain IDs:DA (auth: D8), ED (auth: d8)
Chain Length:63
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E7X9 Pfam ID:PF01200

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29-A
Gene (Uniprot):RPS29A
Chain IDs:EA (auth: D9), FD (auth: d9)
Chain Length:53
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41057 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS30A
Gene (Uniprot):RPS30A
Chain IDs:FA (auth: E0), GD (auth: e0)
Chain Length:62
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX33 Pfam ID:PF04758

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS31
Gene (Uniprot):RPS31
Chain IDs:GA (auth: E1), HD (auth: e1)
Chain Length:76
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05759 Pfam ID:PF01599

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L2-A
Gene (Uniprot):RPL2A
Chain IDs:MA (auth: L2), ND (auth: l2)
Chain Length:252
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX45 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Gene (Uniprot):RPL3
Chain IDs:NA (auth: L3), OD (auth: l3)
Chain Length:386
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14126 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4-A
Gene (Uniprot):RPL4A
Chain IDs:OA (auth: L4), PD (auth: l4)
Chain Length:361
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P10664 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L5
Gene (Uniprot):RPL5
Chain IDs:PA (auth: L5), QD (auth: l5)
Chain Length:296
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26321 Pfam ID:PF17144, PF14204

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL6A
Gene (Uniprot):RPL6A
Chain IDs:QA (auth: L6), RD (auth: l6)
Chain Length:175
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02326 Pfam ID:PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30A
Gene (Uniprot):RPL7A
Chain IDs:RA (auth: L7), SD (auth: l7)
Chain Length:223
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05737 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8-A
Gene (Uniprot):RPL8A
Chain IDs:SA (auth: L8), TD (auth: l8)
Chain Length:233
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P17076 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9-A
Gene (Uniprot):RPL9A
Chain IDs:TA (auth: L9), UD (auth: l9)
Chain Length:191
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05738 Pfam ID:PF00347

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:UA (auth: M0), VD (auth: m0)
Chain Length:220
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41805 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11-B
Gene (Uniprot):RPL11B
Chain IDs:VA (auth: M1), WD (auth: m1)
Chain Length:169
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E757 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL13A
Gene (Uniprot):RPL13A
Chain IDs:WA (auth: M3), YD (auth: m3)
Chain Length:194
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q12690 Pfam ID:PF01294

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL14A
Gene (Uniprot):RPL14A
Chain IDs:XA (auth: M4), ZD (auth: m4)
Chain Length:137
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P36105 Pfam ID:PF00467, PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L15-A
Gene (Uniprot):RPL15A
Chain IDs:YA (auth: M5), AE (auth: m5)
Chain Length:203
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05748 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L16-A
Gene (Uniprot):RPL16A
Chain IDs:ZA (auth: M6), BE (auth: m6)
Chain Length:197
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26784 Pfam ID:PF00572

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L17-A
Gene (Uniprot):RPL17A
Chain IDs:AB (auth: M7), CE (auth: m7)
Chain Length:183
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05740 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18-A
Gene (Uniprot):RPL18A
Chain IDs:BB (auth: M8), DE (auth: m8)
Chain Length:185
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX49 Pfam ID:PF17135

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L19-A
Gene (Uniprot):RPL19A
Chain IDs:CB (auth: M9), EE (auth: m9)
Chain Length:188
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX82 Pfam ID:PF01280, PF25476

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L20-A
Gene (Uniprot):RPL20A
Chain IDs:DB (auth: N0), FE (auth: n0)
Chain Length:172
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX23 Pfam ID:PF01775

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21-A
Gene (Uniprot):RPL21A
Chain IDs:EB (auth: N1), GE (auth: n1)
Chain Length:159
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02753 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22-A
Gene (Uniprot):RPL22A
Chain IDs:FB (auth: N2), HE (auth: n2)
Chain Length:100
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05749 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23-A
Gene (Uniprot):RPL23A
Chain IDs:GB (auth: N3), IE (auth: n3)
Chain Length:136
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX41 Pfam ID:PF00238

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL24A
Gene (Uniprot):RPL24A
Chain IDs:HB (auth: N4), JE (auth: n4)
Chain Length:135
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04449 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L25
Gene (Uniprot):RPL25
Chain IDs:IB (auth: N5), KE (auth: n5)
Chain Length:121
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04456 Pfam ID:PF03939, PF00276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24A
Gene (Uniprot):RPL26A
Chain IDs:JB (auth: N6), LE (auth: n6)
Chain Length:126
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05743 Pfam ID:PF16906, PF00467

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27-A
Gene (Uniprot):RPL27A
Chain IDs:KB (auth: N7), ME (auth: n7)
Chain Length:135
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H6 Pfam ID:PF01777

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):RPL28
Chain IDs:LB (auth: N8), NE (auth: n8)
Chain Length:148
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P02406 Pfam ID:PF00828

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:MB (auth: N9), OE (auth: n9)
Chain Length:58
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05747 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL30
Gene (Uniprot):RPL30
Chain IDs:NB (auth: O0), PE (auth: o0)
Chain Length:100
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14120 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31-A
Gene (Uniprot):RPL31A
Chain IDs:OB (auth: O1), QE (auth: o1)
Chain Length:109
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H8 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:PB (auth: O2), RE (auth: o2)
Chain Length:127
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38061 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L33-A
Gene (Uniprot):RPL33A
Chain IDs:QB (auth: O3), SE (auth: o3)
Chain Length:106
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05744 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34-A
Gene (Uniprot):RPL34A
Chain IDs:RB (auth: O4), TE (auth: o4)
Chain Length:112
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P87262 Pfam ID:PF01199

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35-A
Gene (Uniprot):RPL35A
Chain IDs:SB (auth: O5), UE (auth: o5)
Chain Length:119
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX84 Pfam ID:PF00831

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36-A
Gene (Uniprot):RPL36A
Chain IDs:TB (auth: O6), VE (auth: o6)
Chain Length:99
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05745 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37-A
Gene (Uniprot):RPL37A
Chain IDs:UB (auth: O7), WE (auth: o7)
Chain Length:87
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49166 Pfam ID:PF01907

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:VB (auth: O8), XE (auth: o8)
Chain Length:77
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49167 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39
Gene (Uniprot):RPL39
Chain IDs:WB (auth: O9), YE (auth: o9)
Chain Length:50
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04650 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L40-A
Gene (Uniprot):RPL40A
Chain IDs:XB (auth: Q0), ZE (auth: q0)
Chain Length:52
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CH08 Pfam ID:PF01020

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL41B
Chain IDs:YB (auth: Q1), AF (auth: q1)
Chain Length:25
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX86 Pfam ID:PF05162

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L42-A
Gene (Uniprot):RPL42A
Chain IDs:ZB (auth: Q2), BF (auth: q2)
Chain Length:105
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX27 Pfam ID:PF00935

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L43-A
Gene (Uniprot):RPL43A
Chain IDs:AC (auth: Q3), CF (auth: q3)
Chain Length:91
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX25 Pfam ID:PF01780

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S0-A
Gene (Uniprot):RPS0A
Chain IDs:B (auth: S0), CC (auth: s0)
Chain Length:206
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:B3LI22 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS1A
Chain IDs:C (auth: S1), DC (auth: s1)
Chain Length:216
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:B3RHV0 Pfam ID:PF01015

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS5
Gene (Uniprot):RPS2
Chain IDs:D (auth: S2), EC (auth: s2)
Chain Length:217
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P25443 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS3
Gene (Uniprot):RPS3
Chain IDs:E (auth: S3), FC (auth: s3)
Chain Length:223
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05750 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS4A
Gene (Uniprot):RPS4A
Chain IDs:F (auth: S4), GC (auth: s4)
Chain Length:260
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX35 Pfam ID:PF08071, PF01479, PF00900, PF00467, PF16121

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Rps5p
Chain IDs:G (auth: S5), HC (auth: s5)
Chain Length:206
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26783 Pfam ID:PF00177

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS6A
Gene (Uniprot):RPS6A
Chain IDs:H (auth: S6), IC (auth: s6)
Chain Length:226
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX37 Pfam ID:PF01092

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS7A
Gene (Uniprot):RPS7A
Chain IDs:I (auth: S7), JC (auth: s7)
Chain Length:186
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26786 Pfam ID:PF01251

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS8A
Gene (Uniprot):RPS8A
Chain IDs:J (auth: S8), KC (auth: s8)
Chain Length:199
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CX39 Pfam ID:PF01201

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS4A
Gene (Uniprot):RPS9A
Chain IDs:K (auth: S9), LC (auth: s9)
Chain Length:185
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:O13516 Pfam ID:PF00163, PF01479

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1
Gene (Uniprot):STM1
Chain IDs:IA (auth: SM)
Chain Length:159
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39015 Pfam ID:PF09598

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein RACK1
Gene (Uniprot):ASC1
Chain IDs:HA (auth: SR), ID (auth: sR)
Chain Length:318
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38011 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS10A,40S ribosomal protein S10-A,40S ribosomal protein S10-A,40S Ribosomal Protein S10-A
Gene (Uniprot):RPS10A
Chain IDs:MC (auth: c0)
Chain Length:96
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q08745 Pfam ID:PF03501

Polymer Type:polypeptide(L)
Molecule:60S Ribosomal Protein L12
Chain IDs:XD (auth: m2)
Chain Length:150
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL10
Gene (Uniprot):RPP0
Chain IDs:DF (auth: p0)
Chain Length:219
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05317 Pfam ID:PF00466, PF17777

Polymer Type:polypeptide(L)
Molecule:60S Ribosomal Protein P1/2
Chain IDs:EF (auth: p1), FF (auth: p2)
Chain Length:47
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1
Gene (Uniprot):STM1
Chain IDs:JD (auth: sM)
Chain Length:159
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P39015 Pfam ID:PF09598

Ligand Molecules

8AN

OHX

PRO

Primary Citation

Molecular insights into protein synthesis with proline residues.

Melnikov, S, Mailliot, J, Rigger, L, Neuner, S, Shin, B.S, Yusupova, G, Dever, T.E, Micura, R, Yusupov, M.Show

EMBO Rep. 17 1776 1784 (2016)

PMID: 27827794 DOI: 10.15252/embr.201642943

Abstact

Proline is an amino acid with a unique cyclic structure that facilitates the folding of many proteins, but also impedes the rate of peptide bond formation by the ribosome. As a ribosome substrate, proline reacts markedly slower when compared with other amino acids both as a donor and as an acceptor of the nascent peptide. Furthermore, synthesis of peptides with consecutive proline residues triggers ribosome stalling. Here, we report crystal structures of the eukaryotic ribosome bound to analogs of mono- and diprolyl-tRNAs. These structures provide a high-resolution insight into unique properties of proline as a ribosome substrate. They show that the cyclic structure of proline residue prevents proline positioning in the amino acid binding pocket and affects the nascent peptide chain position in the ribosomal peptide exit tunnel. These observations extend current knowledge of the protein synthesis mechanism. They also revise an old dogma that amino acids bind the ribosomal active site in a uniform way by showing that proline has a binding mode distinct from other amino acids.

Legend

Protein

Chemical

Disease

Primary Citation of related structures

Abstact

Feedback Form