ISDA

Entry Detail

PDB ID:

5TER

Keywords:

Title:

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 5-chloro-7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-8-methyl-2-naphthonitrile (JLJ651), a Non-nucleoside Inhibitor

Biological Source:

Source Organism:

Human immunodeficiency virus type 1 group M subtype B (isolate BH10)

Host Organism:

Escherichia coli BL21(DE3)

PDB Version:

Deposition Date:

2016-09-22

Release Date:

2017-01-11

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.26

R-Value Work:

0.22

R-Value Observed:

0.23

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT
Mutations:C280S, K172A, K173A
Chain IDs:A
Chain Length:557
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B (isolate BH10)

UniProt ID:P03366 Pfam ID:PF00078, PF06817, PF06815, PF00075 EC:3.1.26.13

Protein Blast

Polymer Type:polypeptide(L)
Description:HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT
Mutations:C280S
Chain IDs:B
Chain Length:428
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B (isolate BH10)

UniProt ID:P03366 Pfam ID:PF00078, PF06817, PF06815, PF00075 EC:3.1.26.13

Ligand Molecules

7AY

SO4

Primary Citation

Design, Conformation, and Crystallography of 2-Naphthyl Phenyl Ethers as Potent Anti-HIV Agents.

Lee, W.G, Chan, A.H, Spasov, K.A, Anderson, K.S, Jorgensen, W.L.Show

ACS Med Chem Lett 7 1156 1160 (2016)

PMID: 27994756 DOI: 10.1021/acsmedchemlett.6b00390

Abstact

Catechol diethers that incorporate a 7-cyano-2-naphthyl substituent are reported as non-nucleoside inhibitors of HIV-1 reverse transcriptase (NNRTIs). Many of the compounds have 1-10 nM potencies toward wild-type HIV-1. An interesting conformational effect allows two unique conformers for the naphthyl group in complexes with HIV-RT. X-ray crystal structures for 4a and 4f illustrate the alternatives.

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Primary Citation of related structures