5TEC image
Deposition Date 2016-09-20
Release Date 2017-02-01
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5TEC
Keywords:
Title:
Crystal structure of the TIR domain from the Arabidopsis thaliana NLR protein SNC1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
Gene (Uniprot):SNC1
Chain IDs:A, B
Chain Length:174
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
Multiple functional self-association interfaces in plant TIR domains.
Proc. Natl. Acad. Sci. U.S.A. 114 E2046 E2052 (2017)
PMID: 28159890 DOI: 10.1073/pnas.1621248114

Abstact

The self-association of Toll/interleukin-1 receptor/resistance protein (TIR) domains has been implicated in signaling in plant and animal immunity receptors. Structure-based studies identified different TIR-domain dimerization interfaces required for signaling of the plant nucleotide-binding oligomerization domain-like receptors (NLRs) L6 from flax and disease resistance protein RPS4 from Arabidopsis Here we show that the crystal structure of the TIR domain from the Arabidopsis NLR suppressor of npr1-1, constitutive 1 (SNC1) contains both an L6-like interface involving helices αD and αE (DE interface) and an RPS4-like interface involving helices αA and αE (AE interface). Mutations in either the AE- or DE-interface region disrupt cell-death signaling activity of SNC1, L6, and RPS4 TIR domains and full-length L6 and RPS4. Self-association of L6 and RPS4 TIR domains is affected by mutations in either region, whereas only AE-interface mutations affect SNC1 TIR-domain self-association. We further show two similar interfaces in the crystal structure of the TIR domain from the Arabidopsis NLR recognition of Peronospora parasitica 1 (RPP1). These data demonstrate that both the AE and DE self-association interfaces are simultaneously required for self-association and cell-death signaling in diverse plant NLRs.

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Primary Citation of related structures