5TDU image
Deposition Date 2016-09-19
Release Date 2017-03-22
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5TDU
Keywords:
Title:
Toluene 4-monooxygenase (T4moHD) bound to product after turnover in crystal
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Toluene-4-monooxygenase system protein A
Gene (Uniprot):tmoA
Chain IDs:A
Chain Length:493
Number of Molecules:1
Biological Source:Pseudomonas mendocina
Polymer Type:polypeptide(L)
Molecule:Toluene-4-monooxygenase system protein E
Gene (Uniprot):tmoE
Chain IDs:B
Chain Length:308
Number of Molecules:1
Biological Source:Pseudomonas mendocina
Polymer Type:polypeptide(L)
Molecule:Toluene-4-monooxygenase system protein B
Gene (Uniprot):tmoB
Chain IDs:C
Chain Length:84
Number of Molecules:1
Biological Source:Pseudomonas mendocina
Polymer Type:polypeptide(L)
Molecule:Toluene-4-monooxygenase system protein D
Gene (Uniprot):tmoD
Chain IDs:D (auth: E)
Chain Length:103
Number of Molecules:1
Biological Source:Pseudomonas mendocina
Primary Citation
In-crystal reaction cycle of a toluene-bound diiron hydroxylase.
Nature 544 191 195 (2017)
PMID: 28346937 DOI: 10.1038/nature21681

Abstact

Electrophilic aromatic substitution is one of the most important and recognizable classes of organic chemical transformation. Enzymes create the strong electrophiles that are needed for these highly energetic reactions by using O2, electrons, and metals or other cofactors. Although the nature of the oxidants that carry out electrophilic aromatic substitution has been deduced from many approaches, it has been difficult to determine their structures. Here we show the structure of a diiron hydroxylase intermediate formed during a reaction with toluene. Density functional theory geometry optimizations of an active site model reveal that the intermediate is an arylperoxo Fe2+/Fe3+ species with delocalized aryl radical character. The structure suggests that a carboxylate ligand of the diiron centre may trigger homolytic cleavage of the O-O bond by transferring a proton from a metal-bound water. Our work provides the spatial and electronic constraints needed to propose a comprehensive mechanism for diiron enzyme arene hydroxylation that accounts for many prior experimental results.

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Primary Citation of related structures