5TD8 image
Deposition Date 2016-09-17
Release Date 2016-11-16
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5TD8
Keywords:
Title:
Crystal structure of an Extended Dwarf Ndc80 Complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
7.53 Å
R-Value Free:
0.32
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NDC80
Gene (Uniprot):NDC80
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NUF2
Gene (Uniprot):NUF2
Chain IDs:B
Chain Length:198
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC24
Gene (Uniprot):SPC24
Chain IDs:C
Chain Length:114
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC25
Gene (Uniprot):SPC25
Chain IDs:D
Chain Length:129
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:nanobody
Chain IDs:E
Chain Length:145
Number of Molecules:1
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
Conserved Tetramer Junction in the Kinetochore Ndc80 Complex.
Cell Rep 17 1915 1922 (2016)
PMID: 27851957 DOI: 10.1016/j.celrep.2016.10.065

Abstact

The heterotetrameric Ndc80 complex establishes connectivity along the principal longitudinal axis of a kinetochore. Its two heterodimeric subcomplexes, each with a globular end and a coiled-coil shaft, connect end-to-end to create a ∼600 Å long rod spanning the gap from centromere-proximal structures to spindle microtubules. Neither subcomplex has a known function on its own, but the heterotetrameric organization and the characteristics of the junction are conserved from yeast to man. We have determined crystal structures of two shortened ("dwarf") Ndc80 complexes that contain the full tetramer junction and both globular ends. The junction connects two α-helical coiled coils through regions of four-chain and three-chain overlap. The complexity of its structure depends on interactions among conserved amino-acid residues, suggesting a binding site for additional cellular factor(s) not yet identified.

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Disease

Primary Citation of related structures
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