5TD4 image
Deposition Date 2016-09-16
Release Date 2016-11-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5TD4
Keywords:
Title:
Starch binding sites on the Human pancreatic alpha amylase D300N variant complexed with an octaose substrate.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pancreatic alpha-amylase
Gene (Uniprot):AMY2A
Mutagens:D300N
Chain IDs:A
Chain Length:496
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLN modified residue
Peptide-like Molecules
PRD_900001
PRD_900010
PRD_900035
Primary Citation
Evaluation of the Significance of Starch Surface Binding Sites on Human Pancreatic alpha-Amylase.
Biochemistry 55 6000 6009 (2016)
PMID: 27756128 DOI: 10.1021/acs.biochem.6b00992

Abstact

Starch provides the major source of caloric intake in many diets. Cleavage of starch into malto-oligosaccharides in the gut is catalyzed by pancreatic α-amylase. These oligosaccharides are then further cleaved by gut wall α-glucosidases to release glucose, which is absorbed into the bloodstream. Potential surface binding sites for starch on the pancreatic amylase, distinct from the active site of the amylase, have been identified through X-ray crystallographic analyses. The role of these sites in the degradation of both starch granules and soluble starch was probed by the generation of a series of surface variants modified at each site to disrupt binding. Kinetic analysis of the binding and/or cleavage of substrates ranging from simple maltotriosides to soluble starch and insoluble starch granules has allowed evaluation of the potential role of each such surface site. In this way, two key surface binding sites, on the same face as the active site, are identified. One site, containing a pair of aromatic residues, is responsible for attachment to starch granules, while a second site featuring a tryptophan residue around which a malto-oligosaccharide wraps is shown to heavily influence soluble starch binding and hydrolysis. These studies provide insights into the mechanisms by which enzymes tackle the degradation of largely insoluble polymers and also present some new approaches to the interrogation of the binding sites involved.

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Primary Citation of related structures